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Commit ea8367cb authored by Amine AIT-GANI's avatar Amine AIT-GANI
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Rapport_Source/vu-cs-standard-thesis/0_frontmatter/abstract.tex 0 → 100644
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% Thesis Abstract -----------------------------------------------------
%\begin{abstractslong} %uncommenting this line, gives a different abstract heading
%\\begin{abstracts} %this creates the heading for the abstract page
%\
%\\noindent \textit{Context}.
%\\todo{at the end}
%\\noindent \textit{Goal}.
%\\todo{at the end}
%\\noindent \textit{Method}.
%\\todo{at the end}
%\\noindent \textit{Results}.
%\\todo{at the end}
%\\noindent \textit{Conclusions}.
%\\todo{at the end}
%\\end{abstracts}%\
%\end{abstractlongs}
% ----------------------------------------------------------------------
Rapport_Source/vu-cs-standard-thesis/0_frontmatter/acknowledgement.tex 0 → 100644
View file @ ea8367cb
% Thesis Acknowledgements ------------------------------------------------
%\begin{acknowledgementslong} %uncommenting this line, gives a different acknowledgements heading
\begin{acknowledgements} %this creates the heading for the acknowlegments
It is a pleasure for me to pay off a debt of gratitude to all the people whose intervention during this project helped to bring it to fruition. I would like to thank Mr. Philipe Gaussier my supervisor, not only for his judicious supervision, during the entire internship period, but also for all the knowledge he transmitted to me during the period I spent at the ETIS Laboratory, as well as for his human qualities and also for his human qualities that arouse admiration and respect, also for always been attentive and very available throughout the production of this internship, as well as for the inspiration, the help and the time that he dedicated us.\\
I would like to warmly thank Mr. Histace Aymeric for accepting being my reporter. I would like also to express my deepest thanks and appreciation to our professor Mr. Jordane Lorandel, for his efforts and his follow-up throughout the year.\\
Finally, I would like to thank all the people who advised me during the internship period: my family, my friends and classmates.\\
\end{acknowledgements}
%\end{acknowledgmentslong}
% ------------------------------------------------------------------------
Rapport_Source/vu-cs-standard-thesis/0_frontmatter/dedication.tex 0 → 100644
View file @ ea8367cb
% Thesis Dedication ---------------------------------------------------
%\begin{dedication} %this creates the heading for the dedication page
%To ...
%\end{dedication}
% ----------------------------------------------------------------------
\ No newline at end of file
Rapport_Source/vu-cs-standard-thesis/0_frontmatter/glossary.tex 0 → 100644
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% this file is called up by thesis.tex
% content in this file will be fed into the main document
% Glossary entries are defined with the command \nomenclature{1}{2}
% 1 = Entry name, e.g. abbreviation; 2 = Explanation
% You can place all explanations in this separate file or declare them in the middle of the text. Either way they will be collected in the glossary.
% required to print nomenclature name to page header
%\markboth{\MakeUppercase{\nomname}}{\MakeUppercase{\nomname}}
% ----------------------- contents from here ------------------------
%\nomenclature{LSY}{ehbfuefebbfbjkjkebfjbfbfw}
%\nomenclature{DEPC}{diethyl-pyro-carbonate; used to remove RNA-degrading enzymes (RNAases) from water and laboratory utensils}
%\nomenclature{DMSO}{dimethyl sulfoxide; organic solvent, readily passes through skin, cryoprotectant in cell culture}
%\nomenclature{EDTA}{Ethylene-diamine-tetraacetic acid; a chelating (two-pronged) molecule used to sequester most divalent (or trivalent) metal ions, such as calcium (Ca$^{2+}$) and magnesium (Mg$^{2+}$), copper (Cu$^{2+}$), or iron (Fe$^{2+}$ / Fe$^{3+}$)}
Rapport_Source/vu-cs-standard-thesis/Latex/Classes/PhDthesisPSnPDF.cls 0 → 100644
View file @ ea8367cb
%---------------------------------------------------------------
% PhDthesis version 2 style file by Jakob Suckale, 2007
% based on CUEDthesis version 1 by Harish Bhanderi 2002
%---------------------------------------------------------------
%-------------------------- identification ---------------------
%\NeedsTeXFormat{LaTeX2e}
\ProvidesClass{Latex/Classes/PhDthesisPSnPDF}[2007/09/06 v2 PhD thesis class]
%:-------------------------- report or book -----------------------
%If you want to use a Report style document then uncomment the following 3 lines and comment the below 8 book style lines:
%\DeclareOption*{\PassOptionsToClass{\CurrentOption}{report}}
%\ProcessOptions\relax
%%\LoadClass[a4paper]{report}
%\ifx\pdfoutput\undefined
% \LoadClass[dvips, a4paper]{report}
%\else
% \LoadClass[pdftex, a4paper]{report}
%\fi
%%Bibliography
%%uncomment next line to change bibliography name to references for Report document class
%\renewcommand{\refname}{References}
%If you want to use a Book style document then uncomment the following 3 lines and comment the above 8 report style lines:
\DeclareOption*{\PassOptionsToClass{\CurrentOption}{book}}
\ProcessOptions\relax
\ifx\pdfoutput\undefined
\LoadClass[dvips, a4paper]{book}
\else
\LoadClass[pdftex, a4paper]{book}
\fi
%:-------------------------- packages for fancy things -----------------------
\usepackage{amssymb}
\usepackage{graphics} % for improved inclusion of graphics
%\usepackage{wrapfig} % to include figure with text wrapping around it
\usepackage[margin=10pt,font=small,labelfont=bf]{caption} % for improved layout of figure captions with extra margin, smaller font than text
\usepackage{fancyhdr} % for better header layout
\usepackage{eucal}
\usepackage[english]{babel}
\usepackage[usenames, dvipsnames]{color}
\usepackage[perpage]{footmisc}
\usepackage[round, sort, numbers]{natbib}
\usepackage{ifthen}
\usepackage{multicol} % for pages with multiple text columns, e.g. References
\setlength{\columnsep}{20pt} % space between columns; default 10pt quite narrow
\usepackage[nottoc]{tocbibind} % correct page numbers for bib in TOC, nottoc suppresses an entry for TOC itself
%\usepackage{nextpage}
%:-------------------------- Glossary/Abbrev./Symbols -----------------------
\usepackage[intoc]{nomencl} % load nomencl extension; include in TOC
%\nomrefpage % to include page numbers after abbrevations
\renewcommand{\nomname}{Glossary} % rename nomenclature
\renewcommand{\nomlabel}[1]{\textbf{#1}} % make abbreviations bold
\makenomenclature % used to be \makeglossary
\newcommand{\g}{\footnote{For all abbreviations see the glossary on page \pageref{nom}.}} % type "\g" to refer to glossary
% used to be for sorting into categories:
%\renewcommand\nomgroup[1]{%
% \ifthenelse{\equal{#1}{A}}{%
% \item[\textbf{Roman Symbols}] }{% A - Roman
% \ifthenelse{\equal{#1}{G}}{%
% \item[\textbf{Greek Symbols}]}{% G - Greek
% \ifthenelse{\equal{#1}{R}}{%
% \item[\textbf{Superscripts}]}{% R - Superscripts
% \ifthenelse{\equal{#1}{S}}{%
% \item[\textbf{Subscripts}]}{{% S - Subscripts
% \ifthenelse{\equal{#1}{X}}{%
% \item[\textbf{Other Symbols}]}{{% X - Other Symbols
% \ifthenelse{\equal{#1}{Z}}{%
% \item[\textbf{Acronyms}]}% Z - Acronyms
% {{}}}}}}}}}}
%:-------------------------- PDF/PS setup -----------------------
%if you use a macTeX 2008 or later, use the ifpdf package
\usepackage{ifpdf}
%if you use an older version, uncomment these lines:
%\newif \ifpdf
% \ifx \pdfoutput \undefined
% for running latex
% \pdffalse
% \else
% for running pdflatex
% \pdfoutput = 1 % positive value for a PDF output
% otherwise a DVI
% \pdftrue
%\fi
\ifpdf
%-->
%--> Google.com search "hyperref options"
%-->
%--> http://www.ai.mit.edu/lab/sysadmin/latex/documentation/latex/hyperref/manual.pdf
%--> http://www.chemie.unibas.ch/~vogtp/LaTeX2PDFLaTeX.pdf
%--> http://www.uni-giessen.de/partosch/eurotex99/ oberdiek/print/sli4a4col.pdf
%--> http://me.in-berlin.de/~miwie/tex-refs/html/latex-packages.html
%-->
\usepackage[ pdftex, plainpages = false, pdfpagelabels,
pdfpagelayout = useoutlines,
bookmarks,
bookmarksopen = true,
bookmarksnumbered = true,
breaklinks = true,
linktocpage,
pagebackref,
colorlinks = false, % was true
linkcolor = blue,
urlcolor = blue,
citecolor = red,
anchorcolor = green,
hyperindex = true,
hyperfigures
]{hyperref}
\DeclareGraphicsExtensions{.png, .jpg, .jpeg, .pdf, .gif} %GIF doesn't work??
\usepackage[pdftex]{graphicx}
\pdfcompresslevel=9
\graphicspath{{0_frontmatter/figures/PNG/}{0_frontmatter/figures/PDF/}{0_frontmatter/figures/}}
\else
\usepackage[ dvips,
bookmarks,
bookmarksopen = true,
bookmarksnumbered = true,
breaklinks = true,
linktocpage,
pagebackref,
colorlinks = true,
linkcolor = blue,
urlcolor = blue,
citecolor = red,
anchorcolor = green,
hyperindex = true,
hyperfigures
]{hyperref}
\DeclareGraphicsExtensions{.eps, .ps}
\usepackage{epsfig}
\usepackage{graphicx}
\graphicspath{{0_frontmatter/figures/EPS/}{0_frontmatter/figures/}}
\fi
%:-------------------------- page layout -----------------------
%A4 settings
\ifpdf
\pdfpageheight=297mm
\pdfpagewidth=210mm
\else
\setlength{\paperheight}{297mm}
\setlength{\paperwidth}{210mm}
\fi
\setlength{\hoffset}{0.00cm}
\setlength{\voffset}{0.00cm}
%: Uncomment this secion for two-sided printing
% ------------------------------
\setlength{\oddsidemargin}{1.5cm}
\setlength{\evensidemargin}{0cm}
\setlength{\topmargin}{1mm}
\setlength{\headheight}{1.36cm}
\setlength{\headsep}{1.00cm}
\setlength{\textheight}{20.84cm}
\setlength{\textwidth}{14.5cm}
\setlength{\marginparsep}{1mm}
\setlength{\marginparwidth}{3cm}
\setlength{\footskip}{2.36cm}
%: Uncomment this secion for one-sided printing
% taken from the original file, but with the first two lanes modified
% ------------------------------
%\setlength{\evensidemargin}{1.9cm} % was 1.96cm in original
%\setlength{\oddsidemargin}{-0.001cm} % was -0.54cm in original file
%\setlength{\topmargin}{1mm}
%\setlength{\headheight}{1.36cm}
%\setlength{\headsep}{1.00cm}
%\setlength{\textheight}{20.84cm}
%\setlength{\textwidth}{14.5cm}
%\setlength{\marginparsep}{1mm}
%\setlength{\marginparwidth}{3cm}
%\setlength{\footskip}{2.36cm}
%: section below defines fancy page layout options
% ------------------------------
\pagestyle{fancy}
\renewcommand{\chaptermark}[1]{\markboth{\MakeUppercase{\thechapter. #1 }}{}}
\renewcommand{\sectionmark}[1]{\markright{\thesection\ #1}}
\fancyhf{}
\fancyhead[RO]{\bfseries\rightmark}
\fancyhead[LE]{\bfseries\leftmark}
\fancyfoot[C]{\thepage}
\renewcommand{\headrulewidth}{0.5pt}
\renewcommand{\footrulewidth}{0pt}
\addtolength{\headheight}{0.5pt}
\fancypagestyle{plain}{
\fancyhead{}
\renewcommand{\headrulewidth}{0pt}
}
%:-------------------------- title page layout -----------------------
% starts roman page numbering until chapter 1
% important to avoid two pages numbered 1 and 2 which may cause bad links
% bug: cover i + back side ii and then numbering restarts with i; should be iii
\renewcommand{\thepage}{\roman{page}}
\newcommand{\submittedtext}{{A thesis submitted for the degree of}}
% DECLARATIONS
% These macros are used to declare arguments needed for the
% construction of the title page and other preamble.
% The year and term the degree will be officially conferred
\def\degreedate#1{\gdef\@degreedate{#1}}
% The full (unabbreviated) name of the degree
\def\degree#1{\gdef\@degree{#1}}
% The name of your college or department(eg. Trinity, Pembroke, Maths, Physics)
\def\collegeordept#1{\gdef\@collegeordept{#1}}
% The name of your University
\def\university#1{\gdef\@university{#1}}
% Defining the crest
\def\crest#1{\gdef\@crest{#1}}
% Stating the city of birth for title page where needed; uncommented for use
%\def\cityofbirth#1{\gdef\@cityofbirth{#1}}
% These macros define an environment for front matter that is always
% single column even in a double-column document.
\newenvironment{alwayssingle}{%
\@restonecolfalse\if@twocolumn\@restonecoltrue\onecolumn
\else\newpage\fi}
{\if@restonecol\twocolumn\else\newpage\fi}
%define title page layout
\renewcommand{\maketitle}{%
\begin{alwayssingle}
\renewcommand{\footnotesize}{\small}
\renewcommand{\footnoterule}{\relax}
\thispagestyle{empty}
% \null\vfill
\begin{center}
{ \Huge {\bfseries {\@title}} \par}
{\large \vspace*{35mm} {{\@crest} \par} \vspace*{25mm}}
{{\Large \@author} \par}
% \vspace*{1ex}
% {{\@cityofbirth} \par}
{\large
\vspace*{1ex}
{{\@collegeordept} \par}
\vspace*{1ex}
{{\@university} \par}
\vspace*{25mm}
{{\submittedtext} \par}
\vspace*{1ex}
{\it {\@degree} \par}
\vspace*{2ex}
{\@degreedate}
}%end large
\end{center}
\null\vfill
\end{alwayssingle}}
% page number for cover back side should have page number blanked
%:-------------------------- front matter layout -----------------------
% DEDICATION
%
% The dedication environment makes sure the dedication gets its
% own page and is set out in verse format.
\newenvironment{dedication}
{\begin{alwayssingle}
\pagestyle{empty}
\begin{center}
\vspace*{1.5cm}
{\LARGE }
\end{center}
\vspace{0.5cm}
\begin{quote} \begin{center}}
{\end{center} \end{quote} \end{alwayssingle}}
% ACKNOWLEDGEMENTS
%
% The acknowledgements environment puts a large, bold, centered
% "Acknowledgements" label at the top of the page. The acknowledgements
% themselves appear in a quote environment, i.e. tabbed in at both sides, and
% on its own page.
\newenvironment{acknowledgements}
{\pagestyle{empty}
\begin{alwayssingle}
\begin{center}
\vspace*{1.5cm}
{\Large \bfseries Acknowledgements}
\end{center}
\vspace{0.5cm}
\begin{quote}}
{\end{quote}\end{alwayssingle}}
% The acknowledgementslong environment puts a large, bold, centered
% "Acknowledgements" label at the top of the page. The acknowledgement itself
% does not appears in a quote environment so you can get more in.
\newenvironment{acknowledgementslong}
{\pagestyle{empty}
\begin{alwayssingle}
\begin{center}
\vspace*{1.5cm}
{\Large \bfseries Acknowledgements}
\end{center}
\vspace{0.5cm}\begin{quote}}
{\end{quote}\end{alwayssingle}}
%ABSTRACT
%
%The abstract environment puts a large, bold, centered "Abstract" label at
%the top of the page. The abstract itself appears in a quote environment,
%i.e. tabbed in at both sides, and on its own page.
\newenvironment{abstracts} {\begin{alwayssingle} \pagestyle{empty}
\begin{center}
\vspace*{1.5cm}
{\Large \bfseries Abstract}
\end{center}
\vspace{0.5cm}
\begin{quote}}
{\end{quote}\end{alwayssingle}}
%The abstractlong environment puts a large, bold, centered "Abstract" label at
%the top of the page. The abstract itself does not appears in a quote
%environment so you can get more in.
\newenvironment{abstractslong} {\begin{alwayssingle} \pagestyle{empty}
\begin{center}
\vspace*{1.5cm}
{\Large \bfseries Abstract}
\end{center}
\vspace{0.5cm} \begin{quote}}
{\end{quote}\end{alwayssingle}}
%The abstractseparate environment is for running of a page with the abstract
%on including title and author etc as required to be handed in separately
\newenvironment{abstractseparate} {\begin{alwayssingle} \pagestyle{empty}
\vspace*{-1in}
\begin{center}
{ \Large {\bfseries {\@title}} \par}
{{\large \vspace*{1ex} \@author} \par}
{\large \vspace*{1ex}
{{\@collegeordept} \par}
{{\@university} \par}
\vspace*{1ex}
{{\it \submittedtext} \par}
{\it {\@degree} \par}
\vspace*{2ex}
{\@degreedate}}
\end{center}}
{\end{alwayssingle}}
%Statement of originality if required
\newenvironment{declaration} {\begin{alwayssingle} \pagestyle{empty}
\begin{center}
\vspace*{1.5cm}
{\Large \bfseries Declaration}
\end{center}
\vspace{0.5cm}
\begin{quote}}
{\end{quote}\end{alwayssingle}}
%:-------------------------- page numbers: roman+arabic -----------------------
% ROMANPAGES
%
% The romanpages environment set the page numbering to lowercase roman one
% for the contents and figures lists. It also resets
% page-numbering for the remainder of the dissertation (arabic, starting at 1).
%\newenvironment{romanpages}
%{
% \setcounter{page}{1}
% \renewcommand{\thepage}{\roman{page}}
%} % close romanpage env't
{\newpage\renewcommand{\thepage}{\arabic{page}}\setcounter{page}{1}}
Rapport_Source/vu-cs-standard-thesis/Latex/Classes/jmb.bst 0 → 100644
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Rapport_Source/vu-cs-standard-thesis/Latex/Classes/urlbst 0 → 100644
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